rs47197945 SNP Detail

Summary

• ID
  rs47197945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:13281702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAAGGTG CATAGACTCA
  TTTTATTCTA CTTGAAATGA ACTTGTGTCT GACCCTCATG AGATCATGTG GTATAGCCAA
  CAGCCTTCCT ACACGGAATC CCATAATTTT TCATCCTAGT AATCATTTTC TCCCCATCTA
  TCCTGTAGCT TACCAGTAAT TTCAACATGT GTCACTTTAG TTCCATTAGA GAAAACAGAA
  Y
  GAAGGCCAGT GTTAACAAAC AATGAAGATC AATTCCTTGG ATCAGTACTT TGATTGAACA
  AGACTCATAA CAACTGTAAC TTTCAATAAA CTATATAACA TTGGAAACAA GGAAGCTGAA
  AGACTGCCTA CTTCAAGCCA ATTAACTAAT ATCACAAGCC TGTTGGCTGT ATGGGTAGTT
  GGGGTCTGAT CTGATTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63397529	NES16968087	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47197945					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63397529	NES16968087	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:13281702 () rs orientation: forward

Symbol	Name	Function Class
D15Mit53	DNA segment, Chr 15, Massachusetts Institute of Technology 53	1025 bp distal