rs47198484 SNP Detail

Summary

• ID
  rs47198484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41366473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATT TACCTTGCTC TTCAGGATTG
  R
  ACAGTAAGCC CATGGCAGAT CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60600909	NES16305388	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G		A	G	G	A		A
ss144675689	ENSMUSSNP1924878	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322633681	CHEV_8_41998790	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47198484					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600909	NES16305388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41366473 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	1298 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77038	transcription start site region 77038	799 bp downstream
Tssr77039	transcription start site region 77039	522 bp upstream
Tssr77040	transcription start site region 77040	567 bp upstream
Tssr77041	transcription start site region 77041	1475 bp upstream
Tssr77042	transcription start site region 77042	1617 bp upstream