rs47199476 SNP Detail

Summary

• ID
  rs47199476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCACGACA TTCTCTCTGG CCCCGCTAGA
  AAATAACGTT AAGAGGGATA GTGCCAGCCA AGCCCGGTGT TAGCTGAAGT GAGTAACACC
  AAGTGGGGGA GGGGATGCAA ATCTTGGCTT ATCCCACACT GTCCTGGGAA CTTCTCCTAC
  R
  GTGAATAATG CAGAAGTGAC TGTCAGAGAA GGCTCTTAAA TCCTGCTATA GACTTAGGAT
  TTACTAGTAT TTATGTAGAC ACAACGTATC CATTACAACC AATAACCACT TCTTTTCCTC
  ATGGTAAGGA CAGCAGAGGC CCTAAATAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60822402	NES16493733	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A		G	A	G	G		A
ss320071242	CHEV_1_155034114	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47199476					SNP	A	A	A	G	A	A	A	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822402	NES16493733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	517 bp distal
Lamc2	laminin, gamma 2	537 bp upstream
Rr13130	regulatory region 13130	271 bp proximal
Rr25076	regulatory region 25076	1262 bp proximal
Rr28719	regulatory region 28719	329 bp distal
Tssr14250	transcription start site region 14250	928 bp upstream
Tssr14251	transcription start site region 14251	892 bp upstream
Tssr14252	transcription start site region 14252	862 bp upstream
Tssr14253	transcription start site region 14253	848 bp upstream
Tssr14254	transcription start site region 14254	829 bp upstream