rs47200256 SNP Detail

Summary

• ID
  rs47200256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73293303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATGAAG CTGGAAGAGC
  AAGGACCTCA GGGAAGCAGA ATTCCACTCC ACTGAGTGCC AGATGACATT GTACTGAGGG
  AGAAGGCTGG GTATTGCCAG TGCTGAGGTA GGTGGCCTCC TGTTGAAGGG TTCCCTGGAG
  GGAACTGGAC TTCACAAGGC ACCACAGATG CAGGCAGGAG CCCTTCTTCT CAGGATAAGG
  Y
  ATCTATACTG CTGCTTGGTT TCCTCCAAGA GGGACAGACA AGATCTCTAA GCAGATTTGT
  ACAATGAAGA CAGAGACCAT GGGAGAAGCA GAAGATGGGC AGCCACGAAG ACTTGCTTGC
  CTTCGTTGGG TTCTCGGAAG CCACTGCCCT GGCCAAGGAC CAAGGATAGC CTGAGAATGG
  TATTTGGATC CTTTGTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62893082	NES17390921	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	T
ss145927714	ENSMUSSNP150175	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47200256					SNP	T	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62893082	NES17390921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73293303 () rs orientation: forward

Symbol	Name	Function Class
Gm23649	predicted gene, 23649	1490 bp upstream