rs47201280 SNP Detail

Summary

• ID
  rs47201280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84340043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGCCTT TTGGTGTTTT
  ACAATGTTTA TCTTTGTCAC TGTGCTCTCT TTACCTATTT CCCTGAAATT TCTGCCCTAT
  TTTTACAGTA ATAGGGGCTC ATGGTCACAA GGTTGAGATA CGGCTAACCA TGTGTGGTTT
  GGGCTGCTTT CTGTAATCCT GTAGAATAAG GAGGAGACAG AATAGAGGAC ATGGTGGAGG
  K
  CAGGTAGAAT TCTTTGAAGA AAAGGTGGCA TTTGAAAAAT TCTTATGACT TCATGGAAAA
  CGAAAGGAAG TGTTCCTGAA GAGGGCTTGG GAGAAACACA CAATGCTCTT GTGAGGTGAC
  AGACAAGTTT CTGGGGCAGG ATATTCTAAA ATAAATCACC AAAGCTAAGC CTGGCCAGCC
  ACCGTGGCCC AGGCCTTTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145209008	ENSMUSSNP3617175	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47201280					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84340043 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	326 bp distal
Rr400423	regulatory region 400423	720 bp downstream
Rr650631	regulatory region 650631	1802 bp distal
Rr650632	regulatory region 650632	1081 bp distal
Rr650633	regulatory region 650633	889 bp distal
Rr650634	regulatory region 650634	388 bp distal
Tssr73444	transcription start site region 73444	1014 bp upstream
Tssr73445	transcription start site region 73445	1001 bp upstream
Tssr73446	transcription start site region 73446	936 bp upstream
Tssr73447	transcription start site region 73447	917 bp upstream
Tssr73448	transcription start site region 73448	896 bp upstream
Tssr73449	transcription start site region 73449	871 bp upstream
Tssr73450	transcription start site region 73450	844 bp upstream
Zfand6	zinc finger, AN1-type domain 6	819 bp upstream