rs47201896 SNP Detail

Summary

• ID
  rs47201896
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25404994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTG CTTTTGCAAA AAAAAAAAAA
  A
  GTTACATTTC ATGCAGTGGG TTCTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145380249	ENSMUSSNP6287271	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47201896					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25404994 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	1451 bp upstream
Cpgi8755	CpG island 8755	724 bp distal
Cpgi8756	CpG island 8756	1843 bp proximal
Rr370183	regulatory region 370183	1439 bp downstream
Rr523509	regulatory region 523509	961 bp distal
Rr523510	regulatory region 523510	1887 bp proximal
Tssr5037	transcription start site region 5037	1457 bp downstream
Tssr143142	transcription start site region 143142	1418 bp downstream
Tssr143143	transcription start site region 143143	1402 bp downstream
Tssr146818	transcription start site region 146818	1618 bp upstream
Tssr146819	transcription start site region 146819	1552 bp upstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	within coordinates