rs47202673 SNP Detail

Summary

• ID
  rs47202673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10991723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTAGGG TTAGGGGTGA
  AGCTCCTTGA TAACACCCCC TGCCTAGCAT GTGCAAGACC CTGAGTTCAA TCTGGAATAT
  GGGTAACATC ATCAGCACAT GAAATGCTAA ACTGGAACAG CATCTTTGGG TCATTCTTTT
  GAGTGCTAGA GGCAACCTTA TCCTCATTTA CAGGTCTGAC TTAGATCCGT TTCTATTGGC
  R
  CTCTCAAACT GGTCCACTGC AATGGCTCTC CAGTTAGGAA GAGTCAAGAA TCGGGCAACA
  AATGGAGAAC CCCATTAGCA TTCCCCAGAT ACTCCTTCAT TGCGCATGAG GCAATGGTTT
  CCCTCTCTTG CATTTTTACA ACAAAACAAA CAAAATAAGG AATAAGACAC AGCATCTTTC
  ACTATTCTAT ATTTTACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741558	NES17678355	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	G	A	A	A	A	G		G	G	G		A
ss148669468	ENSMUSSNP7193421	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
ss324260886	CHEV_13_10940933	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47202673					SNP	A	A	G	A	G	A	A	A	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741558	NES17678355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10991723 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	278 bp proximal
Rr278201	regulatory region 278201	353 bp proximal