rs47202820 SNP Detail

Summary

• ID
  rs47202820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87322115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTTTTT GAAGATTAAG
  AAAATTAAAA TCATAATAGT TCATTTTTTG GCATTTATTT CCATATGCTT ATTTTCAGGT
  GTTCCTAATT CCATCCAAAC AACAACAACA AAACCCCACA CATTCTTTTA TAAAACCACT
  GAATTTTTAT CTAGGATCTT TTCCTACCCA TTTACACAGT ATAACATTAG TATGGATTTA
  Y
  TAAAACAACT AAGAGCTAAC CTTTTACTAA TGCTTTCAGC ATGGCTCTTT GCCAATTCTA
  AAATTTAAGG AAAAGAACAA ACCTTAGTTC TGACTATCTA GGTAATGTCT GTTTAAAGCT
  CTACTGTAAG CAATCTAGTT CTGCCCCTAT CTGCTGTCAG CTTCCTTACT TGTTCCCCTG
  AAGGAAAGAA TAATGGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60763792	NES16401419	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47202820					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60763792	NES16401419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87322115 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Kcnj13	potassium inwardly-rectifying channel, subfamily J, member 13	within coordinates
Rr414787	regulatory region 414787	218 bp proximal
Rr414788	regulatory region 414788	326 bp proximal
Tssr12853	transcription start site region 12853	328 bp downstream