rs47203168 SNP Detail

Summary

• ID
  rs47203168
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126558202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAATTT AATTAGTGCA
  TACCTTCTGA TTCTTCCCGT TTTCATTTTG TTTACTCCAT ATTTTCTACT GGTCACAATT
  AGCATACCAG AAAACAAAGA ATGTCATGAA CCATCAAAGA CCTTTTCAGA GTAAACCAAA
  GTGTAGGAGT GTTTTCTGGC AGAAGCAGAA ATATGTTTTG GTTCTCAGCT CCGTATAAAC
  M
  TGGTCTTGCC TACTACTTTT CTTTTATAAA CTGATATTAA GAAGAAAACA AAATACTCCA
  AGTTGGAAAT CTATTTGTTT ACAAATGTAG TTTTAACAGA AAAAATATAA AAGCTTTACT
  ATTCTGTTCT TTTTAATAGA TAAGATTTTA ATAGTGATGG CAAAGTGGTA CAATAATCCA
  TTTAGTTAAT GAACATTTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147510238	ENSMUSSNP672154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47203168					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126558202 () rs orientation: forward

Symbol	Name	Function Class
Tssr19969	transcription start site region 19969	1759 bp upstream
Usp8	ubiquitin specific peptidase 8	within coordinates