rs47203939 SNP Detail

Summary

• ID
  rs47203939
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76042127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTCTGT AGACAGGCTG
  GCCTCGAACT CAGAAATCCG CCTGCCTCTG CCTCCCGAGT GCTGGGATTA AAGGCGTGCA
  CTACCACGCC CGGCGAGGTG TGCTGTTCTT TACGCCATCT GCCTGGAGCC TACAAATGCA
  GCTGACTGTG GATAAGCTTC CATTGCTGTG GGATGGCCAG CCAGGGTCCC ACAAGGCACC
  K
  AGAGATCAAG GTCATGCTGT CCATGCTGAG CCTGAGGAGG GCGAGCCCTC ATGAACTCGC
  CTGCCAAGCG GGGTTGGAGT GGCACCTGTG CTCAGTCCTC CAAGGGTTGG GCTGGGCTGG
  TGCTCAGCAA ACATGGGAAG CTGCCTCCTA TCCACAGTGG ACATGGGACA TAGTTAGCCT
  CAGAGGGGGA CAGAGGGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63566435	NES16968246	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47203939					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63566435	NES16968246	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76042127 () rs orientation: forward

Symbol	Name	Function Class
Gm62598	predicted gene, 62598	1847 bp upstream
Rr390932	regulatory region 390932	within coordinates