rs47204725 SNP Detail

Summary

• ID
  rs47204725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156134466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCTTCC CTCAAAAATT
  AAAAAAACAA AACCAAGGAA AACCCACAAA AATAACAAAA ACTTCATAGA AAACCTAATG
  AGTGAGTAGG GATCTATGTA CCCAAGAGAG GAAGGACTGG GGTACAGCAT CTAAACTGGG
  AAGCTACCAG CTACTGCCCT TATCTAGGAA GCGCGTTTCA GGGCGTCTCT GAGGAGGAGA
  Y
  CCAAGATCCA GAAAGGAAGT TTTACACTAA AAGTTTCAGT TACAGTTTCA GGAAGCAAGC
  TGTCTAATAC TGAAGCAAAT GGTGTGGTCA TGAATCTTGT GATATTACAT AAAAGTTAAG
  GGAAAGCTCA AGGTGAGGAG CCAGACTGAA GCCTGAAGTC TTTATAATAA ATTTAAAATA
  AACATGTTTA CCTGATCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148125016	ENSMUSSNP4146258	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321444917	CHEV_4_155424118	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47204725					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156134466 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	335 bp proximal
Rr97568	regulatory region 97568	1748 bp proximal
Rr106662	regulatory region 106662	within coordinates
Tssr45000	transcription start site region 45000	456 bp downstream
Tssr45001	transcription start site region 45001	489 bp downstream
Tssr45002	transcription start site region 45002	724 bp downstream
Tssr45003	transcription start site region 45003	753 bp downstream
Tssr45004	transcription start site region 45004	776 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates