rs47206047 SNP Detail

Summary

• ID
  rs47206047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138951256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTCTAG ATTGATTCCC
  CACTTCCTCA TTACTTCTCA ACTTCCTGTA CTCTCTCTCT AAAAAAACAA AACAAAAGAA
  AGCCCCGAGT CTGCTTTCTG TTGCCCCAAT ACTCACAAGC CATTCACTGG AGTGTAGTTG
  ACCACATCCT TAAAGGAAAC CGACTCTTCT TCCTTTAGAA ACAATCAACT ATTAATAGCT
  Y
  TTCAGTTAAG ATAGGGCCTT GTAAGTCCTT TCTCCCCCCA TTTTAGACCA CTGACTAGCT
  TGATCCTGTA TAGGTTTAAA GCAGGCAACC ATGCTTACTG TGAATTCATG AGGGTGCTGT
  CATGTCTTGG GGATGCTATT TGACCCTGAT CTTCTCCAAC CTCTGACTCT TATGATCTTT
  TGTAGACATT GGTATTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135962321	ENSMUSSNP3660711	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47206047					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138951256 () rs orientation: forward

Symbol	Name	Function Class
Rr398077	regulatory region 398077	within coordinates
Rr586253	regulatory region 586253	within coordinates
Rr586254	regulatory region 586254	999 bp proximal
Rr586255	regulatory region 586255	1219 bp proximal
Stpg2	sperm tail PG rich repeat containing 2	Intron