rs47206151 SNP Detail

Summary

• ID
  rs47206151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30905772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCAGAC ACACCATGAA
  CACAGAATCA TAGTCAGTTA TACAGCAATC GCACCTTTAA AGAGAGTAAA GGAACACGGG
  CAGCACTGGG TATGGCAGCA TGTTAGCAAT TGTGGGCATA AGTGGAGAGG GCACAGTGAG
  TCTAGTGGTT AGCGTCAGCA TGGTAGATAG AAGGAAGAGG AGGAGAAAAT CATATGGACA
  Y
  AAACATCCAG AACAAAGATA GGCTGTCTGA CAGCCTGTCT CTCGGGAGGC TGAGGCACAG
  GGATGCTGCA ATAGAGGCCA AACTGTGTTC TTTGTGAGAA AAAGAAAGCA GAAGACAAGA
  TTAAGGAGAA AAAGAGAAGA AAAGAGAGGT GAAGAACCAG AACCAACGGC TTTGGTGTTG
  AGCCGAGAGG CTGGGTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60988998	NES16133994	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47206151					SNP	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988998	NES16133994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30905772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1848 bp proximal
Gm73020	predicted gene, 73020	1967 bp upstream
Rr645057	regulatory region 645057	1626 bp proximal
Tssr65855	transcription start site region 65855	1485 bp upstream
Tssr65856	transcription start site region 65856	1979 bp upstream