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rs47206353 SNP Detail
Summary
  • ID
    rs47206353
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr16:50362817 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACCTAAAAA TACAATTTTT
    TTCTTGTAAA ATGTATAAAT TGGTTTTGAG AAATTAAGTC ATGTATCTAT ATTTTCTATA
    CATAAGTACA CAGGAAACAT TTTAGAGTTT GTTTCCTGCT CCAAACATGG TCATGTTAAA
    ACGAGATTTT AACATTGTTC ATTGAATTTA AAAGTGAATT TTCTTCCATT TAGCATTTCT
    K
    GCAACTTCAC ACTGAAATGT CTACTTGTTT AGAAAGACAA ATCAATATAT ATATATGTAT
    GTATGTATGT ATGTATGTAT ATATATATAT TCCAAAACAA ACAAAAAAAC CCCATATGGG
    ATGAAAATGT CCACCGAAGG AAATTACTAA TACTTGGATG ATAAAGGAAA TAACATAGGT
    GATTTCATGG CAAAGCATAA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60212603 NES15723114 PERLEGEN MM_PANEL2 f SNP T T T T T G T T T T T G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs47206353 SNP T T T T T G T T T T T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60212603 NES15723114 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:50362817 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
G730013B05Rik RIKEN cDNA G730013B05 gene within coordinates
Gm60707 predicted gene, 60707 361 bp downstream
Rr318669 regulatory region 318669 184 bp proximal
Rr323833 regulatory region 323833 214 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory