rs47206353 SNP Detail

Summary

• ID
  rs47206353
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:50362817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTAAAAA TACAATTTTT
  TTCTTGTAAA ATGTATAAAT TGGTTTTGAG AAATTAAGTC ATGTATCTAT ATTTTCTATA
  CATAAGTACA CAGGAAACAT TTTAGAGTTT GTTTCCTGCT CCAAACATGG TCATGTTAAA
  ACGAGATTTT AACATTGTTC ATTGAATTTA AAAGTGAATT TTCTTCCATT TAGCATTTCT
  K
  GCAACTTCAC ACTGAAATGT CTACTTGTTT AGAAAGACAA ATCAATATAT ATATATGTAT
  GTATGTATGT ATGTATGTAT ATATATATAT TCCAAAACAA ACAAAAAAAC CCCATATGGG
  ATGAAAATGT CCACCGAAGG AAATTACTAA TACTTGGATG ATAAAGGAAA TAACATAGGT
  GATTTCATGG CAAAGCATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60212603	NES15723114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47206353					SNP	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60212603	NES15723114	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:50362817 () rs orientation: forward

Symbol	Name	Function Class
G730013B05Rik	RIKEN cDNA G730013B05 gene	within coordinates
Gm60707	predicted gene, 60707	361 bp downstream
Rr318669	regulatory region 318669	184 bp proximal
Rr323833	regulatory region 323833	214 bp proximal