rs47207118 SNP Detail

Summary

• ID
  rs47207118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70417719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGAGGCCA GAGGTGTGCC AGGGTTGTCT TCCTCATGAG
  ACAGTCTCAC TGAAGATAGA GCTCACTTTT AGCTAGGCTG CCTATCCAAT GAGCTCTAGC
  R
  ATTATACACC CTGCACCCTA CTCCCAGAGC TGGGGTTACA GATACACATG CCCAGCTTTT
  ACATAAGTGC TGGGGATTTG AAATCAGGTC TTCATACTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132372348	ENSMUSSNP1202761	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323735970	CHEV_11_70340395	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47207118					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70417719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1351 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	1509 bp downstream
Rr450322	regulatory region 450322	1497 bp distal
Tssr102728	transcription start site region 102728	1499 bp downstream
Tssr102729	transcription start site region 102729	962 bp downstream
Tssr102730	transcription start site region 102730	918 bp downstream
Tssr102731	transcription start site region 102731	859 bp downstream