rs47208039 SNP Detail

Summary

• ID
  rs47208039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75649898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAATGCTCTC TTCTGGTATG TCTGAAGACA TACATTGTAC
  TCATATACAT GAAATAAATA AAATCATTTT TTAAGAAAAA GTAAAGAAAA TAAAACATTA
  Y
  ATGGAATTCC AATGAAAGAA ACAGATCAGT GATCAACCTC CCAAGTAGCT GGGATTATGG
  ATGTGGTCAT CATGGCCAGC AAGAATTATA TTTTTATGTG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135330141	ENSMUSSNP669016	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47208039					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75649898 () rs orientation: forward

Symbol	Name	Function Class
Rr397722	regulatory region 397722	859 bp upstream
Rr578362	regulatory region 578362	1406 bp proximal