rs47208995 SNP Detail

Summary

• ID
  rs47208995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87824458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCCCAGGTAA AATATTTTAC TAGATCAAAA TTATTTTAAT
  TTATCTCAAA TACATAGTCT ATGTCAATCA ATATACTAAA AGGAGACTTA TTTTTTCTTT
  Y
  TTAGCAACCT TCCCTGGCAC TGGTAAGATA TTTTTAACTA AATCTAAATT ATTTTAATTT
  ATCTCAAATA TGATACCAAT GCAAATTCAT GCCAGTCAAT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148786386	ENSMUSSNP1460779	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47208995					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87824458 () rs orientation: forward

Symbol	Name	Function Class
Csn1s1	casein alpha s1	within coordinates
Tssr46873	transcription start site region 46873	1569 bp downstream
Tssr46874	transcription start site region 46874	430 bp upstream
Tssr46875	transcription start site region 46875	989 bp upstream
Tssr46876	transcription start site region 46876	1254 bp upstream
Tssr46877	transcription start site region 46877	1417 bp upstream
Tssr51608	transcription start site region 51608	1537 bp upstream
Tssr51609	transcription start site region 51609	1468 bp downstream