rs47210513 SNP Detail

Summary

• ID
  rs47210513
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110369256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAGGCG GACTGGCTCT
  CACCAGCATT GTGTTCTTTG AGATAAAAGG TTTGCTTTTC CTGTTCTTAC TCTTGCTGAG
  TCCCTCTTCA GATGGCCTCT GAGTCAATCC CAGATCTTGG CAGTATCTTG GGCAGGTGAA
  ATGTAGGCTT AGAATTAAGT TGGAATATAC TTTTCTTTCC CAAAGCAATT CAGTGGCCTG
  W
  TTCTGTTGTC AAGTATATTA ATCCCTATTT CCTCCATGTG CTGTCTGCAG TTCTAGAAGA
  GACAATGGCT CTGCCTTTTA ATCCACAGTA TGAGGAGCTG ATGAGGGTGC AGGCTGATTG
  ATGGCTGGAG TCCAGGATGT GCACAGTCCC TAGGAAGAAG CAAACTATAG AGGAAATGAC
  CCCCCCCCCC CATGCAGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145647330	ENSMUSSNP2251748	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss322398788	CHEV_7_117913563	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47210513					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110369256 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	within coordinates
B430319F04Rik	RIKEN cDNA B430319F04 gene	704 bp upstream
Cpgi19579	CpG island 19579	816 bp distal
Rr653308	regulatory region 653308	1833 bp distal
Rr653309	regulatory region 653309	1128 bp distal
Rr653310	regulatory region 653310	428 bp distal
Rr653311	regulatory region 653311	613 bp proximal
Tssr68503	transcription start site region 68503	1949 bp downstream
Tssr68504	transcription start site region 68504	1922 bp downstream
Tssr68505	transcription start site region 68505	1893 bp downstream
Tssr68506	transcription start site region 68506	1856 bp downstream
Tssr68507	transcription start site region 68507	1415 bp downstream
Tssr68508	transcription start site region 68508	1202 bp downstream
Tssr68509	transcription start site region 68509	577 bp upstream
Tssr74265	transcription start site region 74265	684 bp upstream