rs47211627 SNP Detail

Summary

• ID
  rs47211627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACATGCA TTAATTTTTA
  AAACAATAAA AATCCCTTTG TGGAGCCAAT TTACATTCCC GAGTTCCCTG CCTTTGCTGG
  AAAGTTCAGG TGAGGGCGAG CACACATAAC TGCATGTGTT CTGATAATTA CAATTCATCC
  GAATTTGTAG TTCCCATTTT GCTTGTCTCA TTACAGAGCC AAGGTGACTT TTAGGATGCA
  Y
  AAGGGTTTTA GCTAATGAGG GATGCTGCAG ATGAGAGGCC GGGCTTCTCT AAGCCTAGGT
  AACATTAGGT GGACTTCAAT GTATATCAGT AGCTCTTCTT TAATTCCTCT AGTTCCTGCA
  TAGATGTTTG TGAATCCCTT CTTTGTGGAT ACCTGCACAA CAGTCATGCT TTTTTAAAAA
  AAAAAATCAG TGTTATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61262559	NES16880299	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47211627					SNP	T	T	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262559	NES16880299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790686 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	419 bp downstream
Med23	mediator complex subunit 23	1328 bp downstream
Tssr92746	transcription start site region 92746	832 bp upstream
Tssr92747	transcription start site region 92747	905 bp upstream
Tssr97085	transcription start site region 97085	704 bp downstream
Tssr97086	transcription start site region 97086	750 bp downstream
Tssr97087	transcription start site region 97087	784 bp downstream
Tssr97088	transcription start site region 97088	842 bp downstream
Tssr97089	transcription start site region 97089	861 bp downstream
Tssr97090	transcription start site region 97090	892 bp downstream
Tssr97091	transcription start site region 97091	1283 bp downstream
Tssr97092	transcription start site region 97092	1303 bp downstream
Tssr97093	transcription start site region 97093	1327 bp downstream
Tssr97094	transcription start site region 97094	1343 bp downstream
Tssr97095	transcription start site region 97095	1357 bp downstream
Tssr97096	transcription start site region 97096	1622 bp downstream
Tssr97097	transcription start site region 97097	1896 bp downstream