rs47211896 SNP Detail

Summary

• ID
  rs47211896
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24020940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAAGTT TTAGCTATAG
  CAACGAGACA ACTAAAGGAG ACAAAGATGA TTGTATCTAT TGGATGTGGA GTTGGTAAAA
  AATCTTTTAT TGTTCTTTTA TTTATGAGTT CTTTTATTAT TCTTTTATTG TTCAGGATCA
  ATTTAGCTCT CCTGAGTGTT CTGTTTTTTC CTATGAAGTT GAGAATTGTC CTTTCCAGCT
  M
  TGTAAAAAAC TGTGTTGGAG TTTTCACGGG AATTGCAATG AACCTGTAGA TTGCTTTTGG
  TAGAATGTCC ATGGAATATC ATTTCATCTT CTCATATCTT CTTCAATTTC TTTCTTTAAA
  AAATATCATA CAAGACTCTC CCTTGCTTGC TTAGAGTTAC CCCAAGATAT TTTATATTAT
  TTGAGGCTAT TATACAGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148763128	ENSMUSSNP1141991	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47211896					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24020940 () rs orientation: forward

Symbol	Name	Function Class
Gm53062	predicted gene 53062	within coordinates
Rr36322	regulatory region 36322	1172 bp proximal
Rr395981	regulatory region 395981	1271 bp upstream