rs47212493 SNP Detail

Summary

• ID
  rs47212493
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73074521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAG AGGGAGAGGG CAGTGCTATC
  S
  GGTGCAGGGT GCCCAGAGCA GGCTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145171444	ENSMUSSNP2764233	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss322708340	CHEV_8_74844576	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47212493					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73074521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	within coordinates
Klf2	Kruppel-like transcription factor 2 (lung)	within coordinates
Rr382266	regulatory region 382266	1219 bp upstream
Rr400967	regulatory region 400967	1550 bp downstream
Rr665302	regulatory region 665302	1634 bp distal
Tssr2606	transcription start site region 2606	1769 bp upstream
Tssr77968	transcription start site region 77968	1785 bp downstream
Tssr77969	transcription start site region 77969	1762 bp downstream
Tssr77970	transcription start site region 77970	1606 bp downstream
Tssr77971	transcription start site region 77971	1106 bp downstream
Tssr77972	transcription start site region 77972	1070 bp downstream
Tssr77973	transcription start site region 77973	1043 bp downstream
Tssr77974	transcription start site region 77974	978 bp downstream
Tssr77975	transcription start site region 77975	800 bp downstream
Tssr77976	transcription start site region 77976	576 bp downstream
Tssr81779	transcription start site region 81779	1847 bp downstream