rs47217122 SNP Detail

Summary

• ID
  rs47217122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88374848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTACAGAT TTTTTTCTTT
  TTTTCTTTTT TTCTTTTTCT TTTTTTTTTT CTTTTTTCTT TCTTGGTTTT TTGAGACAGA
  ATTTCTCTGT GTAGTCCTGG CTGTCCTGGA ACTCATTCTG TAGATCAGGC TGGCCTCTAA
  CTCAGAAATC CGCCTGCCTC TGCCTCCCAC GTGCTGGGAT TAAAGGCATT CGCCACCACT
  K
  TTGGCAAATC ACCCTTCTAG ATGTCAGACA TCTCCTGCCA TTTAAATAAT AACCTATCAT
  ATGATGTACA ATTGCTGGGT TTTTTTTTTT CTTTTTTGGT CATGTGATTT TCAAAGACTC
  ACAATCTTTT CAAAACCTGT ATGTGAAGAC AGCTATTTGA AAAATATCTT GAGGGGCTAG
  AAAGATGGCT CATCCCTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62964598	NES17417152	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47217122					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62964598	NES17417152	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88374848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	775 bp distal
Rr333911	regulatory region 333911	153 bp proximal
Rr333912	regulatory region 333912	953 bp proximal
Rr333913	regulatory region 333913	1753 bp proximal
Rr340317	regulatory region 340317	47 bp distal
Rr344409	regulatory region 344409	843 bp proximal
Rr370332	regulatory region 370332	833 bp downstream
Rr405528	regulatory region 405528	1020 bp downstream
Tssr149795	transcription start site region 149795	1691 bp upstream
Tssr149796	transcription start site region 149796	1589 bp upstream
Tssr149797	transcription start site region 149797	1547 bp upstream
Tssr149798	transcription start site region 149798	1427 bp upstream
Tssr149799	transcription start site region 149799	1333 bp upstream