rs47220948 SNP Detail

Summary

• ID
  rs47220948
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41115540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CGTTCTCCCC AAATAATTGC
  G
  GTTTGAGTCT TTCCCGTGTC ACTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136348381	ENSMUSSNP3292836	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322923625	CHEV_9_41012327	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47220948					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41115540 () rs orientation: forward

Symbol	Name	Function Class
1700063D05Rik	RIKEN cDNA 1700063D05 gene	1911 bp upstream
Gm68881	predicted gene, 68881	1207 bp downstream
Rr194790	regulatory region 194790	461 bp proximal
Rr194791	regulatory region 194791	1061 bp proximal
Tssr2832	transcription start site region 2832	1942 bp upstream
Tssr84492	transcription start site region 84492	1908 bp upstream