rs47221514 SNP Detail

Summary

• ID
  rs47221514
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152916663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCAACAT TTAGTAAGGG
  TTTTTGCAGG AAAGCTGCTT GCAGAGTTAC AGAGGATGTC AGGGAGAATG TGTGGCATTG
  ACAGCCAGCA CCTCTAAAAT GGGGGAGCCA GGAAGAGGAG GGACAGGACA AGCGAGGAGC
  TGCCTGGGAC ACACAGAAAA GACCAGCATC CAAAGACTCT AAATCTCCAG GCACTGCTCC
  C
  GAGAGAGCTG CCTGAGCCAC TAAGAAATGT CTTTATGACA ATGAAAAGTG ACCTGGTGTG
  TGGGTGTGCA GAGAACTCCA TGCGGTCGGA CAAACATTTC CCACTCTCCT CAGCCTCCCC
  ATCCTGTTAC TTGGTCCGTG GCAAATGAAT GATCTGAAAA CTACTGGTCC CAGCAAGGTC
  CAAAGTTATT TGAAGTTTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145736607	ENSMUSSNP3211598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs47221514					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152916663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			1488 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			102 bp distal
Rr420582	regulatory region 420582			539 bp distal
Rr420583	regulatory region 420583			360 bp distal