rs47221575 SNP Detail

Summary

• ID
  rs47221575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12197328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCATGTA TCCATGGGTC
  ACAGAACATA CCTCCAAGGA CAAAGGGTGA CTACTACTGT CATTCTTACA AGCAAGGGCT
  GAAGAAAGAG GTATCTTTGA AAATTGCATG TGAGGACTTC AAAGCACAAA CGGGATCCGA
  GGCTCTGCAG GCCTTTACTG AGCACCAAAC ACCGTGTTTG ACAATATACA CACAACAGGC
  R
  GACTAGGTTC TAAAGCTGCA CTGCAGTCTG GCCACATCCC ATCTTTCCAA CAGTGCCCTC
  TCCTCCCTCA TCTCTTAGCA TATGGCACCA CCCCCCCACA TCCACCAAGT TAGGCTCGAA
  GAGATGTTAG GTGTGTAAAT GCATCCCTCT TGCCCAGCTA GCTTCATCCC TGCTCTTCTG
  ACTAGAATGT TCCCTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61744043	NES17670699	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47221575					SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61744043	NES17670699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12197328 () rs orientation: forward

Symbol	Name	Function Class
Gm10336	predicted gene 10336	275 bp downstream
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	270 bp downstream