rs47221676 SNP Detail

Summary

• ID
  rs47221676
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACCGTGCTCT CCTGAAGGAC ACTCACCTAC TCAGAAGCAG
  AAGTGAGGAA GGTGAAGATG GGGGAGTGGG GAGTAGAGAC ACTGTAAGTA ATTCATGTTA
  A
  GAGGAAAACT GCCACTGAGA ATCCCCTGAA TAAGATAAAG AGACACAGTA ATGGCCAAGG
  CTGGCTAGAG AAGCCCAAGG CACCAACATC CCACAAGAAA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144899334	ENSMUSSNP6853923	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47221676					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192576 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1625 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	within coordinates