rs47221853 SNP Detail

Summary

• ID
  rs47221853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT GCCTCTGCCT CCCGAGTGCT
  R
  GGATTAAAGG CGTGCACCAC CATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323387271	CHEV_10_90544555	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47221853					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917672 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apaf1	apoptotic peptidase activating factor 1			Intron
				Noncoding-Transcript-Variant
Ikbip	IKBKB interacting protein			1130 bp upstream
Rr402144	regulatory region 402144			1044 bp upstream
Rr436976	regulatory region 436976			within coordinates
Rr436977	regulatory region 436977			609 bp proximal
Tssr95222	transcription start site region 95222			281 bp upstream
Tssr95223	transcription start site region 95223			1214 bp upstream
Tssr95224	transcription start site region 95224			1226 bp upstream
Tssr95225	transcription start site region 95225			1271 bp upstream
Tssr98900	transcription start site region 98900			746 bp downstream
Tssr98901	transcription start site region 98901			843 bp downstream
Tssr98902	transcription start site region 98902			873 bp downstream
Tssr98903	transcription start site region 98903			894 bp downstream
Tssr98904	transcription start site region 98904			973 bp downstream