rs47221853 SNP Detail

Summary

• ID
  rs47221853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT GCCTCTGCCT CCCGAGTGCT
  R
  GGATTAAAGG CGTGCACCAC CATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323387271	CHEV_10_90544555	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47221853					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917672 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	373 bp proximal
Ikbip	IKBKB interacting protein	1130 bp upstream
Rr402144	regulatory region 402144	1044 bp upstream
Rr436976	regulatory region 436976	within coordinates
Rr436977	regulatory region 436977	609 bp proximal
Tssr95222	transcription start site region 95222	281 bp upstream
Tssr95223	transcription start site region 95223	1214 bp upstream
Tssr95224	transcription start site region 95224	1226 bp upstream
Tssr95225	transcription start site region 95225	1271 bp upstream
Tssr98900	transcription start site region 98900	746 bp downstream
Tssr98901	transcription start site region 98901	843 bp downstream
Tssr98902	transcription start site region 98902	873 bp downstream
Tssr98903	transcription start site region 98903	894 bp downstream
Tssr98904	transcription start site region 98904	973 bp downstream