rs47223288 SNP Detail

Summary

• ID
  rs47223288
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87688023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT TTGCTGACTG AGCCCCAGTA
  A
  TTCTATGAAA CCTTGAGAGC TTCCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132512995	ENSMUSSNP2519392	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323773679	CHEV_11_87610699	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47223288					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87688023 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	1025 bp distal
Rr453905	regulatory region 453905	971 bp distal
Tssr3632	transcription start site region 3632	1929 bp downstream
Tssr3633	transcription start site region 3633	858 bp downstream
Tssr103990	transcription start site region 103990	1970 bp downstream
Tssr103991	transcription start site region 103991	1897 bp downstream
Tssr103992	transcription start site region 103992	1879 bp downstream
Tssr103993	transcription start site region 103993	1405 bp downstream
Tssr103994	transcription start site region 103994	1323 bp downstream
Tssr103995	transcription start site region 103995	1154 bp downstream
Tssr103996	transcription start site region 103996	1104 bp downstream
Tssr103997	transcription start site region 103997	934 bp downstream
Tssr103998	transcription start site region 103998	789 bp downstream
Tssr103999	transcription start site region 103999	119 bp upstream
Tssr104000	transcription start site region 104000	231 bp upstream
Tssr104001	transcription start site region 104001	261 bp upstream
Tssr104002	transcription start site region 104002	287 bp upstream
Tssr104003	transcription start site region 104003	360 bp upstream
Tssr104004	transcription start site region 104004	386 bp upstream
Tssr104005	transcription start site region 104005	410 bp upstream
Tssr109976	transcription start site region 109976	763 bp upstream
Tssr109977	transcription start site region 109977	148 bp downstream
Tssr109978	transcription start site region 109978	176 bp downstream
Tssr109979	transcription start site region 109979	228 bp downstream
Tssr109980	transcription start site region 109980	416 bp downstream