rs47224489 SNP Detail

Summary

• ID
  rs47224489
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:97308769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GAAACTTCTT GTGTAAAGTT GAAAGACAGA CTACAGCTGG
  GTGTGGTGGG GCCTTTAGTC CCCGCAGAAG CAGAGGCACA GGCAGGCAGA AGTCTGAGTT
  C
  TAGGCCAACC TGGTCCACAT AGGGAGTTTT AGGGCAGCCT ACAGAGAGAA ACCCCATCAA
  TGACGACGAC GATGATGATG ATGATTAGTA TAAACGATAG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132695551	ENSMUSSNP887447	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47224489					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97308769 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	Intron
Cpgi3698	CpG island 3698	1661 bp distal
Gm57393	predicted gene, 57393	within coordinates
Rr455766	regulatory region 455766	1911 bp distal
Rr455767	regulatory region 455767	910 bp distal
Rr455768	regulatory region 455768	1600 bp distal