rs47224623 SNP Detail

Summary

• ID
  rs47224623
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71227988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TGCTACCATG CTCAGCCGGG
  G
  ACACCAGCCT AAAGGACATG GACAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145131462	ENSMUSSNP4193181	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322701501	CHEV_8_73299243	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47224623					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71227988 () rs orientation: forward

Symbol	Name	Function Class
2010320M18Rik	RIKEN cDNA 2010320M18 gene	1518 bp upstream
Cpgi20499	CpG island 20499	536 bp distal
Cpgi20500	CpG island 20500	529 bp proximal
Gm3598	predicted gene 3598	920 bp downstream
Pik3r2	phosphoinositide-3-kinase regulatory subunit 2	within coordinates
Rr186787	regulatory region 186787	within coordinates
Rr368551	regulatory region 368551	1763 bp upstream
Rr400915	regulatory region 400915	1269 bp upstream
Tssr77827	transcription start site region 77827	1418 bp upstream
Tssr77828	transcription start site region 77828	1434 bp upstream
Tssr77829	transcription start site region 77829	1503 bp upstream
Tssr77830	transcription start site region 77830	1988 bp upstream
Tssr81673	transcription start site region 81673	1290 bp downstream
Tssr81674	transcription start site region 81674	1306 bp downstream
Tssr81675	transcription start site region 81675	1376 bp downstream