rs47224917 SNP Detail

Summary

• ID
  rs47224917
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69663881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTCCTA TTTATGGGTT
  TCACAGGCTA ACCAGAGGCT GGACTACACC AGGGCTAGAC GCAGTAGAGG GGAGAGTGCT
  CGTCTAAGCC GTTCCCTCCC AGGCGATGCT CCCGGGACTA GGCCTGGGGA GCTGCTCTAC
  TGTGGGAATA GGAAGCGTGG GCACATGTGG ATAAAGCTGA CACAACCTCA TGGACTGGTA
  S
  GTGAACAAGA TACTCACATC AGCTGTGGGC CAGAGGTCTT TCACCACAGT TTCGATCCGT
  TTCACCACCT CCCTTCTCAT GGCTGCTTCT TCAGGACAAG GGGACATGAA GTTATAAAAG
  TCGATTATCT CCTCATGAAG TCTGTGGAAA AAAGAGAAAA AGGAAGCTGG GCGTGGTGGC
  GCATGCCTTT AATCCCAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52650320	NES15460449	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47224917					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52650320	NES15460449	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69663881 () rs orientation: forward

Symbol	Name	Function Class
Gm48676	predicted gene, 48676	1586 bp downstream
Rr273498	regulatory region 273498	520 bp proximal
Rr277031	regulatory region 277031	681 bp distal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates