rs47225050 SNP Detail

Summary

• ID
  rs47225050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66827239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGG TGGTGTGTTA AGACTTTCCA
  Y
  CCTTACAGGG AAAAGACGCT TCGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61411496	NES16800904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T		T	T	T		C
ss322989027	CHEV_9_66767764	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47225050					SNP	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411496	NES16800904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66827239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	14 bp distal
Rab8b	RAB8B, member RAS oncogene family	270 bp upstream
Rr368814	regulatory region 368814	371 bp downstream
Rr401489	regulatory region 401489	within coordinates
Rr681813	regulatory region 681813	1988 bp distal
Rr681814	regulatory region 681814	within coordinates
Tssr85773	transcription start site region 85773	1095 bp downstream
Tssr85774	transcription start site region 85774	1075 bp downstream
Tssr90294	transcription start site region 90294	1580 bp upstream
Tssr90295	transcription start site region 90295	760 bp upstream
Tssr90296	transcription start site region 90296	247 bp upstream