rs47225278 SNP Detail

Summary

• ID
  rs47225278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184468043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCATTTG TGATTACTAT
  CTATACAACC AGACCTCCCC CTTTTCTTTT CCAGAGAAGG CACACAGCCA AAGATTATTT
  CGCAATACCA AGAATAGTCA AGGTCAAGGC AGGTCCCCTT TAGAATTTGA CAATGTGGTT
  TACGGGGATT TAAGCTAAAG GAAAGGATTC GATGCAAATA CAACACTCAG GCAGGAGGCC
  Y
  AACTGGTCTC TCTTTGGTTC TCTCTTTTGC TCAGATGAGC AAATTCTTGC TTTAGACCCA
  GGGACACACA AAGTCAGCCA CAGAGCATGC TAGGCATTCC TTATGGCAGG AAGAACACTC
  AAGGTGAACT TAAACTAGCC AGAGCTGTGC TGGACTTCTG TTTCTGTCTT GAGATTCTGG
  GGAATATAAT ATGTGAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60355370	NES15858934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47225278					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60355370	NES15858934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184468043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	1100 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425267	regulatory region 425267	1679 bp distal
Rr425268	regulatory region 425268	within coordinates
Rr425269	regulatory region 425269	1966 bp proximal
Tssr10590	transcription start site region 10590	437 bp downstream
Tssr15648	transcription start site region 15648	819 bp upstream