rs47225317 SNP Detail

Summary

• ID
  rs47225317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89363064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGT TTATAGCTCT GGATCCGGAA
  Y
  ATGCAAGAGC ACACTGGTAG TGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60646314	NES16265273	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C	T	T	T		C	T	T	C		T
ss145481212	ENSMUSSNP5491978	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss322766262	CHEV_8_91160335	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47225317					SNP	T	C	T	T	T	C	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60646314	NES16265273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89363064 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	63 bp distal
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	308 bp upstream
Tssr82357	transcription start site region 82357	449 bp upstream
Tssr82358	transcription start site region 82358	320 bp upstream
Tssr82359	transcription start site region 82359	304 bp upstream
Tssr82360	transcription start site region 82360	273 bp upstream