rs47225701 SNP Detail

Summary

• ID
  rs47225701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:4019694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAATATT CCCTTGCTGC
  TGGGAGTGGA AAAACTGAGC TTTATTTAAT GGTGCAAAGT CTGGGCAACA TTTAGGGCAA
  CCCTCCTTCC CAGGAGCAGT CTACTAGAAC AAATTGTACT GCATTAATTA AAAAATAAAC
  AGACAAACAA ACAAAAAACA ACACAAATCA ATAACTTAAA TCCATACATT TTTAACAATC
  R
  ATTCATTACT TAGATGTATA TTGGTTCTTA TTTTTGAAAG GAAGTATGTG ACTTCCAGTA
  TGTCAATGTG ACTTGAAGAA TGTCAGTGAA ACTGGGCTAT ATGCTTTGTA AAGCTAGGGA
  CAAAATTGTT GATTTCTACC TTTAGATTCA TCTTTGTAAG TTAAAAATAA AGGAATATAT
  TTTAAAGTAT TTTAATCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60679938	NES16238496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47225701					SNP	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60679938	NES16238496	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:4019694 () rs orientation: forward

Symbol	Name	Function Class
Rr382823	regulatory region 382823	90 bp upstream