rs47225968 SNP Detail

Summary

• ID
  rs47225968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26840708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGGCA GCTGACCACT
  CCGGTTCTTC TGGCTAGGAG ACAGGGAGCC ATGCCTGGGA GAAGCCTCCC CAGGGGCGGT
  GAGCTCACCT GAGCCACACC TGGGATTTGC CTCACTGCTG AGGTCATCTC CCGGGATTGC
  CAAGAATGAC CTCATCCCAT AATCCCCAAG CAGTGCGCAG ATGTCTAGGT TTACCAGGTG
  R
  GAAAGGTAAG CACTCATGGA AGAGTCTCCC TGGGAAGGGG AGCCCTCTCC CTTGGCTGCT
  GCTCAGTTGA TCACACAGCA ATTTCCTTAC TAGACTGGCA GTCCTTTGGA ATTAAGGCTG
  TGGTAGACAT AGGTGCTGAA AATCAGGAGG GCAGAAACAG GCCCATGGCC TGTTTGTCTT
  TTGCCCACTG GTACTGTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554450	NES16568374	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47225968					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554450	NES16568374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26840708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1			Coding-NonSynonymous
				Intron
Gm17218	predicted gene 17218			within coordinates
Rr523902	regulatory region 523902			1268 bp distal
Rr523903	regulatory region 523903			275 bp distal
Rr523904	regulatory region 523904			within coordinates
Tssr143257	transcription start site region 143257			213 bp downstream