rs47226092 SNP Detail

Summary

• ID
  rs47226092
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7504103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTTGAGT TCTACAACAA
  TTTATAAGAT GACTCATGCT TACTATTTGT CTATCAGTGC TGGGTGACAA CACTGTCATG
  ACTTTCTTTG ATGCCACACT AAACTACCAG AAATTAGAAA ACTCTAGAGA GATAAAAGGC
  CTTAAACACT CTGAGGAATT CCTTCAAGAA CAGCTTGAAG AGTTTACAAA GTTATTACTT
  W
  AAAAATGGCT CCTTTAGAAT CCACTCAATG CTTACGATGC TTTAGTGAAG AGATGCACTG
  TAGAAACTTT TTGGTTTTTT CTTTCCTTTA AGGCAGGCTC TCATGAAATT CGGGCTGGCC
  TTGAACTTGT GTAACCTAGG ATGACTTCTG ACCCTTCCTG CTTCCAAGTG CTGGGATTTC
  AGGCAAGTGC TACCATGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52134657	NES15245591	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47226092					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52134657	NES15245591	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7504103 () rs orientation: forward

Symbol	Name	Function Class
Pcmt1	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	1034 bp downstream
Rr220299	regulatory region 220299	within coordinates
Rr220302	regulatory region 220302	1698 bp proximal
Tssr92302	transcription start site region 92302	982 bp upstream