rs47226361 SNP Detail

Summary

• ID
  rs47226361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158523534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAAACA TCGTATTCTG
  GGGTTATGCA ATGTGGGTGC TGCAATTAGC TGATTTCCTT ACAGATAGAC AGGTTTTGAC
  ATAACATTTC TTCACCAAAA TTGACTATTG TTAGCGCCTA TTGTATATTT GCCCACATGG
  GGTACAAATT AGTGTAATTC ATTCCTTACT ACCTTTACTA GGAACAGAAC CACAGCGATA
  Y
  TCTGTGCCTA ATAAGAAGGG CAAGTTCCTT TGTTTTGGAT GATTAAAATG TCAAGAGACC
  CTGAGGCTGT TGTCCCAAGA GTCACTCGCT GTTCTCTGAC TTGCCCACTA GACAGGAAAC
  CACCTCAGAC CACGTCCTTG TAGTAACCCA GGACTCAGCT TTATTCACAT GGATGAAACT
  AAGGTCAGAC AAGCTTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60333213	NES15837323	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47226361					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60333213	NES15837323	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158523534 () rs orientation: forward

Symbol	Name	Function Class
Rr421480	regulatory region 421480	1679 bp proximal