rs47226527 SNP Detail

Summary

• ID
  rs47226527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCCCCTCC CTTCTCCCCT CTGCTGATAC
  CTCAGCTCAT GGGCTAACAG CTGGAGTTTT AGGAAGATCT CAGCTTAATG CTGTGgacac
  aggctgaagg acagagcctg tggtcctcag acatggaaag gccagaatct gaagctaagc
  Y
  cttttatagg taaaatgact aaaacttcag agagcttaag tgaccagcct aaggccacac
  agtaaaagct gggcttaaaa ctcagacctt ttgatccccc aaagagtcat cttctggctt
  ctgctgtttt tctTTATTGC CCATGAAAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145548017	ENSMUSSNP4060256	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319993838	CHEV_1_137734192	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47226527					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765353 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1192 bp distal
Rr419295	regulatory region 419295	883 bp distal
Rr419296	regulatory region 419296	30 bp distal
Rr419297	regulatory region 419297	134 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1219 bp downstream
Tssr9006	transcription start site region 9006	795 bp upstream
Tssr9007	transcription start site region 9007	1292 bp upstream