rs47227334 SNP Detail

Summary

• ID
  rs47227334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69285196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACTGGA GGGAGATGTT
  TGAGGCTTAG GTTTCCTGCC TGATTGCTTC TGGTTTTTTT CTGATAGTTT GGGGAGGTCA
  TAGTAGAGAA ACTGGGTGTG GCTTTGCTTT TGTACCTGAT CAGTGAGCAG GAGGGAAATA
  GCAAGTCCCT TCTGCCCACG CCTGAGGGCT GTTATTACAG AGAGGGCCTG ATGCAGACAG
  R
  AGCTATTGAG GACACTTCCC AGAGACAGTG ACTGTTCTGA AACCCTGGGC AGCTTGCCCA
  TGTGCAGTGC AGCAGAGTTT ACAAGCACCT CCGCAGGTCA CTGCTGTTAC CTTCAGCTGC
  TAGATGCTAG TTTGCTGAGG CCCTGCATGG CTTGCCTGTA GAACTTACTC GTACAGTCCA
  GTGAGATGGC TAAAGAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136600607	ENSMUSSNP6183607	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322998169	CHEV_9_69225721	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47227334					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69285196 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682167	regulatory region 682167	730 bp distal