rs47227353 SNP Detail

Summary

• ID
  rs47227353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42455083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCCCTG CCCCTGGATT
  GTCAGACGGC GGGCGTCTGC CTCTGAAGTT AGCCGTGATT TCCTCTAGAG CCGGGTCTTA
  TCTCTGGCTG CACGTTGCCT GTGGGTGACT AATCACACAA TAACATTGTT TAGGGCTGGA
  ATAAAGTCAG AGCTGTTTAC CCCCACTCTA TAGGGGTTCA ATATAAAAAG GCGGCGGAGA
  R
  CTGTCCGAGT CAGAAGCGTT CCTGCACCGG CGCTGAGAGC CTGACCCGGT CTGCTCCGCT
  GTCCTTGCGC GCTGCCTCCC GGCTGCCCGC GACGCTTTCG CCCCAGTGGA AGGGCCACTT
  GCTGAGGACC GCGCTGAGAT CTAAAAAAAA AACAAAAAAC AAAAAACAAA AAAACCCAGA
  GGCGATCAGA GCGACCAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629866	NES15518717	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47227353					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629866	NES15518717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42455083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	within coordinates
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	659 bp distal
Edn1	endothelin 1	within coordinates
Gm47118	predicted gene, 47118	691 bp downstream
Gm60910	predicted gene, 60910	within coordinates
Rr388326	regulatory region 388326	within coordinates
Rr478144	regulatory region 478144	265 bp distal
Rr478145	regulatory region 478145	838 bp distal
Rr478146	regulatory region 478146	121 bp distal
Rr478147	regulatory region 478147	1026 bp proximal
Tssr119437	transcription start site region 119437	326 bp downstream
Tssr119438	transcription start site region 119438	172 bp downstream
Tssr119439	transcription start site region 119439	116 bp downstream
Tssr119440	transcription start site region 119440	89 bp downstream
Tssr119441	transcription start site region 119441	5 bp upstream
Tssr119442	transcription start site region 119442	175 bp upstream
Tssr119443	transcription start site region 119443	216 bp upstream
Tssr119444	transcription start site region 119444	346 bp upstream