rs47227516 SNP Detail

Summary

• ID
  rs47227516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118688487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCCAGC CCAGCCCAGC
  CCCCACCCCG CCCGTGCCAT TTCCTATGGA ACCTTTCTTA ATCGACTGCT CTTTCAGTCT
  TCTACAGACA GCCAAGGAGA GCCCATTTCC TTGTGAAACT TTCTTCTCCT GAAGATCCCT
  CAGTCACATC CTTGCACCCG AGATAAAGGA CATAAAACTT CACATCACCC ACAGACGAGG
  Y
  TTGGCCCGGT TTGGCACGTG AGCATTGCAG CTTAGTCTCA CACCAAGGTC CTCACTCTCT
  GGGCTCCACA AGGGCCATCC TTCGGCTGCT TGCTCAACGT CATGTCACCA CCCACTCTTC
  CTCAGAAAAA GCTATTTCCT TGAGAAGCCA CCCAGGACCT ATACAACACA GGACGCCCGC
  TCTGCCGTCG TACGCATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss61322051	NES16929562	PERLEGEN	MM_PANEL2	f	SNP	T		C	C
ss323503888	CHEV_10_118289638	CHEVERUD	SCREENING_POP	f	SNP		T			C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs47227516					SNP	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322051	NES16929562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118688487 () rs orientation: forward

Symbol	Name	Function Class
Gm67702	predicted gene, 67702	299 bp downstream
Rr226050	regulatory region 226050	114 bp proximal
Rr226051	regulatory region 226051	1115 bp proximal