rs47229297 SNP Detail

Summary

• ID
  rs47229297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48533275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGTGGAGC AGAATGAAAA
  AATGGTGCTT CGAAGAGAGG TTTAAAGTCT TGACGCTGTC AGTCATGAGA CCTTGAAAAG
  GAAGCAAGGA TCTTGGGATT TAGCTCAGGG CAGAGGGATT ACTTAACAGG CTCAAGGCCC
  CAGGGGTCAT CTCCAGCATC ATACGCAAGT ATAGTGCGTC AATTTGAAGT TTGGTGTGAT
  W
  TTAAAGGAAA GATGACCGCA GAATACCTTC CAGCTTACTG TGCAAACGAG GGGTTGGAGG
  ACAAGCTTGA AGTCACTTTT CTTACTTTCC CTTCAAATCT TATTTTTTTG TTATTGATTA
  TATAACCCAA GAAGATTTCC ATGCCTTTGT GTCTGGTCAT ATGAGTTGCA CAATAGCTCA
  TATCTCACTG AGCTGGGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149208232	ENSMUSSNP1146162	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47229297					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48533275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	1054 bp distal
E2f8	E2F transcription factor 8	1931 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400336	regulatory region 400336	1577 bp downstream
Rr646939	regulatory region 646939	1942 bp distal
Rr646940	regulatory region 646940	1441 bp distal
Tssr66769	transcription start site region 66769	1661 bp downstream
Tssr66770	transcription start site region 66770	1282 bp upstream
Tssr72633	transcription start site region 72633	1908 bp upstream
Tssr72634	transcription start site region 72634	1856 bp upstream
Tssr72635	transcription start site region 72635	1173 bp upstream
Tssr72636	transcription start site region 72636	184 bp upstream