rs47229693 SNP Detail

Summary

• ID
  rs47229693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102248645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCCTGGT GGGCTAGGCA
  TACCACACAG CAGAGCGGGC CAGCTAGAAC CAGGTCACAG CGGGCCAGGA TGGACCAGCT
  GGTCCAATCT AAGTCAGGGT AAGACTAGAC TGGCCAGGAA CAGGTGGAGT TCAACCCACT
  GCATCCAAAT AGTGAATCTA AAGTCAAGCC AGTCCAGGGT GGGAAACCTG GCCTCTTCTG
  Y
  CCTCCCACAA GCTCCCTGGG GATAAAACCT GACCTCTTCT GTCCACAAGC TCCTTGGCTA
  ACCAGCCACA TCTCCCTCCA TCCCCCCAGC CCTCCACACT CACTCTTTCT GTCATGAGAG
  TTGCTGCAGC CCTGCCCAGC TGGGTATAGT CGACATGCGG AGCCTCAGGT CCCAGCAGAA
  CAAGAAGGAA GCCCACAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132735930	ENSMUSSNP41037	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47229693					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102248645 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	1677 bp upstream
Tssr111050	transcription start site region 111050	1627 bp upstream
Tssr111051	transcription start site region 111051	1579 bp upstream
Tssr111052	transcription start site region 111052	1369 bp upstream
Tssr111053	transcription start site region 111053	1313 bp upstream
Tssr111054	transcription start site region 111054	980 bp upstream
Tssr111055	transcription start site region 111055	908 bp upstream
Tssr111056	transcription start site region 111056	723 bp upstream
Tssr111057	transcription start site region 111057	647 bp upstream
Tssr111058	transcription start site region 111058	658 bp downstream