rs47229715 SNP Detail

Summary

• ID
  rs47229715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10609200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATTCTATCCA TGGTTCAGGT CACTTCCTGA CAGTAGCTGT
  AGGAGTGGAC CTTGTTTTCC CTAGTCCCTT CCCTCAGGCC CCTTCCCTCA GGCCCCTTCC
  Y
  TAAGGCCCAC GGTGTTGTTG AAAAGGAGAC AGCAGTCAGT GAATCTCGTG TCAAGCTTTA
  TTTGGCAGGT GGCTTTGCTC AGTACTCAGA TCTCGTGGCT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147847356	ENSMUSSNP2019563	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47229715					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10609200 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	41 bp downstream
Prm3	protamine 3	422 bp upstream
Rr511598	regulatory region 511598	568 bp distal
Rr511599	regulatory region 511599	429 bp distal
Tssr137053	transcription start site region 137053	97 bp upstream
Tssr137054	transcription start site region 137054	247 bp upstream
Tssr137055	transcription start site region 137055	465 bp upstream
Tssr137056	transcription start site region 137056	488 bp upstream
Tssr139950	transcription start site region 139950	417 bp upstream
Tssr139951	transcription start site region 139951	386 bp upstream
Tssr139952	transcription start site region 139952	143 bp downstream
Tssr139953	transcription start site region 139953	248 bp downstream
Tssr139954	transcription start site region 139954	297 bp downstream
Tssr139955	transcription start site region 139955	395 bp downstream
Tssr139956	transcription start site region 139956	759 bp downstream
Tssr139957	transcription start site region 139957	1797 bp downstream