rs47230011 SNP Detail

Summary

• ID
  rs47230011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155090021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGTCTACAG CTTACTTGCC TGTTTCTTGC ACCCTTCCCT
  CTACCACTCG AAGAGGCTCA GCCTGGCCAG CGTGATCATT CCTTGGGTTG TAAAATGATC
  R
  AGCCCTTCAG GGACTTGTGG CTGGCTCCCA AGAAAGCCAT GTTGTAGGAG AGCTATGGGG
  CCTTGGTTTG ACAGGGCAGG TCTCTAGCCA CAGCTGCCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145777549	ENSMUSSNP2047976	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47230011					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155090021 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420974	regulatory region 420974			229 bp distal
Rr420975	regulatory region 420975			745 bp proximal
Rr420976	regulatory region 420976			1276 bp proximal