rs47230104 SNP Detail

Summary

• ID
  rs47230104
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAAAAG CCAGAAATTG
  AGGCACGCGG GAAAGAAGCA GTGTCTTCCG GAATGGCAGG ATTGCTACAC TCATGATGCC
  AGCTTTGTTA CCTGAACCCA ATCAAGACAG TCAACATTCC AGCATGAGAA GTGAGGAGGC
  CTCAGGAGCT GCCCAATCCA GCTGAGGCAC TATTGATAAT TGGTGGCTTC TGGAGGAGGA
  W
  GAATCTGTTT TCTTGGAGGA TATGGTCCTG GGTAGGTCAA CCATGCTCCA CATGCATGGA
  CATATGGGAG CATGAACTGA ACTCTGAGTT ATAAACCAAG AAAGGAGAAA TGATGTTCTA
  AAGTTGGGAA GGGTGGTGGA TCAGGGAGGA GTTAGGGATA GAAGTTGGGG AAGAATATGA
  TGAAAATACG TTGTATGTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146076317	ENSMUSSNP6685422	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47230104					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114062 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	598 bp downstream
Rr393005	regulatory region 393005	1323 bp downstream
Rr393006	regulatory region 393006	943 bp upstream
Rr531544	regulatory region 531544	1451 bp proximal