rs47231703 SNP Detail

Summary

• ID
  rs47231703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69558541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC CTGTGGATGT AGTTTTCCCT
  R
  TTGGTGGGAA GGTCATAGTT GATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730985	CHEV_11_69481217	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47231703					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69558541 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	1562 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm22988	predicted gene, 22988	1920 bp downstream
Gm24029	predicted gene, 24029	119 bp downstream
Gm25835	predicted gene, 25835	1137 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	1072 bp distal
Tssr102515	transcription start site region 102515	1873 bp downstream
Tssr102516	transcription start site region 102516	1222 bp downstream
Tssr102517	transcription start site region 102517	1200 bp downstream
Tssr108758	transcription start site region 108758	1890 bp upstream
Tssr108759	transcription start site region 108759	1872 bp upstream
Tssr108760	transcription start site region 108760	1810 bp upstream
Tssr108761	transcription start site region 108761	1639 bp upstream
Tssr108762	transcription start site region 108762	1566 bp upstream
Tssr108763	transcription start site region 108763	1546 bp upstream
Tssr108764	transcription start site region 108764	460 bp upstream
Tssr108765	transcription start site region 108765	329 bp upstream
Tssr108766	transcription start site region 108766	1276 bp downstream