rs47232409 SNP Detail

Summary

• ID
  rs47232409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:118893921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAAATG ATGTAAATGT
  AGTATTCATT TATGAAATTA TAAAAAAAAA TTAACCAGGC AATCTTACCA AATTTCATGA
  TATAGTTGAG CAGAAGGATC ATGCTGTGAG TCTAGTATTT AATGGTATCA CTACTGTAGT
  GCTACAGATT CCATCTAGCA ATTTAAAAGT GAAATTGACA TCCTTAAATT TGGAAATGTC
  R
  TCAATCATCT CCTTTGCTTA AGTTACTGAA AAATCCAAAA ACATATAATT GATGAGTTTT
  TGTTATTTTA TTTAATTGAA TTTGTTCTTT GACAATTTCA TACATATACA ATGGATTCTA
  ACTTCTCATC CTCCACCATT TTTTAAAATC TTCCATCCTT CCAAACCCTT TTCCTCCCCT
  ACCAGTTTCT TTCAGATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62066705	NES17155400	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47232409					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62066705	NES17155400	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:118893921 () rs orientation: forward

Symbol	Name	Function Class
Fgf10	fibroblast growth factor 10	within coordinates
Rr366762	regulatory region 366762	1562 bp upstream