rs47232860 SNP Detail

Summary

• ID
  rs47232860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27955168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCCAC GCCTTGCTGG
  TAACAACTAA GCCCCACATG CATATTCAAA AATCAGAAGC TTTTGGTTTT CATCAAATAT
  CTCTAGGAGC TGCTTTATAT ATGTTCTTAA ATACTAGACG TATGACCAGT CCGCTACCCA
  AATCTAAGAC AACCCCTTTG TTCAACATTG ATGTATTAGT ATGTATTTCT TGGATCCTCA
  W
  ATAGGGTTTA CATGCTATAG TTCCATGTAG AGAAAGTGTG TTGGCTCCCA CTAATGTTTG
  TCAACTGCCT TTTACTGTTT CTGCCCGAGT GTGTTTCTGT GTGTTTTGAC AGAGTAGGTC
  ATGCTGAGTG TGAGTCGGCA CTGTTTCCAT TTCCTAGACT TGTTCTTCAT TGAGGGGAGG
  ACAGGGAATT GCTGAAGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52210453	NES15215926	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47232860					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210453	NES15215926	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27955168 () rs orientation: forward

Symbol	Name	Function Class
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates